Skill: Computational scientific workflows (data pipelines)

Ability to design and implement automated sequences of data processing steps that move and transform data between systems - typically within Workflow Management Systems (WMS) using workflow definition languages.

Related skills

• Programming
• Task automation

Tools

• Apache Airflow
• Galaxy
• KNIME
• Nextflow
• Parsl
• Snakemake

Languages

• Nextflow DSL
• Snakefiles
• WDL

Methodologies

• CWL